28704 Mtc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28704 chr_6 Mtc superfamily 1297192 1298493 + Mtc superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453270 Thaps28704.1, Thaps28704.3, Thaps28704.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0052
 0.43

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.9491

bd672

(bd672) NA
0.8899

bd1360

(bd1360) ycf24
0.8826

bd1765

(bd1765) NA
0.8804

bd1318

(bd1318) atpF
0.8565

bd1645

(bd1645) tpt
0.8555

bd1720

(bd1720) ftsH
0.8517

bd218

(bd218) Chloroa_b-bind superfamily
0.8505

bd1766

(bd1766) NA
0.8498

bd1023

(bd1023) atpD
0.8478

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Mtc superfamily Tricarboxylate carrier; Tricarboxylate carrier. - 251.129 6.93E-81 3 - 334 superfamily 262080

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13034 PHATRDRAFT_13034 226433 242048 313221 Not available Not available 504824

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006812 GO:0008324 GO:0016020 -

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008324

cation transmembrane transporter activity

Details: 
Catalysis of the transfer of cation from one side of the membrane to the other.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

Add comment

Log in to post comments