bd1318 (bd1318) atpFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1318	bd_26x41	(bd1318) atpF	50030	50569	-	atpF

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0065

Most Highly Correlated Transcripts

ThpsCp015 (atpF) ATP synthase CF0 B subunit 1	bd598 (bd598) atpG 0.9984	ThpsCp014 (atpG) ATP synthase CF0 B' subunit 0.9984	bd1023 (bd1023) atpD 0.9956	ThpsCp016 (atpD) ATP synthase CF1 delta subunit 0.9956	bd1290 (bd1290) atpH 0.9899
ThpsCp013 (atpH) ATP synthase CF0 C subunit 0.9899	bd1378 (bd1378) atpI 0.9891	ThpsCp012 (atpI) ATP synthase CF0 A subunit 0.9891	ThpsCt001 (trnM(cau)) 0.9796

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
atpF		ATP synthase CF0 B subunit	cl17192	171.202	7.64E-54	1 - 174	specific	176962
PRK14471 superfamily		F0F1 ATP synthase subunit B; Provisional	-	171.202	7.64E-54	1 - 174	superfamily	266543
PRK07352		F0F1 ATP synthase subunit B; Validated	-	90.0143	1.12E-22	8 - 177	multi-dom	180941

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments