30533 Kin17_mid
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30533 chr_20 Kin17_mid 133886 135418 + Kin17_mid

Synonyms

NCBI ID Ensembl Genomes exon ID
7447820 Thaps30533.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0262

Most Highly Correlated Transcripts

40200

TRX_reduct
0.9151

16114

PLN02350
0.9121

23550

hypothetical protein
0.9104

269624

TIM_phosphate_binding superfamily
0.8946

19158

GRX_PICOT_like
0.8921

36884

RimI
0.8918

267979

HCO3_cotransp superfamily
0.8889

37118

FeThRed_B
0.8851

3890

COG0398
0.8827

268443

SAICAR_synt_Sc
0.8812

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KOW_KIN17 KOW_Kin17 is a RNA-binding motif; KOW domain of the KIN17protein contributes to the RNA-binding... cl00354 69.1021 6.64E-15 371 - 419 specific 240519
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 69.1021 6.64E-15 371 - 419 superfamily 260377
Kin17_mid superfamily Domain of Kin17 curved DNA-binding protein; Kin17_mid is the conserved central 169 residue region... - 176.674 1.37E-53 52 - 175 superfamily 255934
Kin17_mid superfamily Domain of Kin17 curved DNA-binding protein; Kin17_mid is the conserved central 169 residue region... - 176.674 1.37E-53 52 - 175 superfamily 255934

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_5508 PHATR_5508 164453 218968 45067 Cre16.g654350.t1.1 AT1G55460.1 309869

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005634 GO:0008270 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

Add comment

Log in to post comments