32216 (RT5) rpsE_bact
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
32216 chr_2 (RT5) rpsE_bact 856231 856716 + rpsE_bact
NCBI ID Ensembl Genomes exon ID
7450237 Thaps32216.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0067
rpsI
0.9446
Ape1-like_AP-endo
0.9385
LSm1
0.9353
PRK05279
0.9339
HemK
0.9325
RabGAP-TBC
0.9322
Ribosomal_L7_L12
0.9287
fabG
0.9275
Aldolase_II superfamily
0.9255
OTU
0.9212
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S5_C superfamily Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain. - 68.6007 7.25E-16 76 - 147 superfamily 252121
Ribosomal_S5_C superfamily Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain. - 68.6007 7.25E-16 76 - 147 superfamily 252121
rpsE_bact ribosomal protein S5, bacterial/organelle type; This model finds chloroplast ribosomal protein S5... - 87.3563 3.90E-22 1 - 149 multi-dom 130093
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42848 PHATRDRAFT_42848 200999 31020 440718 Not available AT1G64880.1 547128
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
Log in to post comments