32766 COG1936Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32766	chr_3	COG1936	1619705	1620418	+	COG1936

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449524	Thaps32766.1, Thaps32766.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0227

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0259	0.35	0.0037 7800

Most Highly Correlated Transcripts

42412 RNAP_I_II_AC40 0.8921	3944 COG0218 0.8858	2392 hypothetical protein 0.8841	4372 hypothetical protein 0.8772	268443 SAICAR_synt_Sc 0.8703	31256 TGT superfamily 0.8685
24217 hypothetical protein 0.8675	5806 TIM_phosphate_binding superfamily 0.8673	22163 hypothetical protein 0.8657	24879 hypothetical protein 0.8648

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG1936		Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]	cl19128	145.147	1.28E-43	12 - 179	specific	224847
AAA_17 superfamily		AAA domain; AAA domain.	-	145.147	1.28E-43	12 - 179	superfamily	267481

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_7072	PHATRDRAFT_7072	170331	287260	75738	Cre02.g081550.t1.2	AT5G60340.1	336490

KEGG

KEGG description	KEGG Pathway
Basal transcription factors	map03022

GO Terms

Not available -

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