34018 RPN7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34018 chr_5 RPN7 420727 422157 + RPN7

Synonyms

NCBI ID Ensembl Genomes exon ID
7451751 Thaps34018.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

28028

RPN6
0.9146

16295

FBPase
0.9065

33094

Sun
0.9046

9880

SGNH_hydrolase superfamily
0.8994

2145

hypothetical protein
0.898

3354

hypothetical protein
0.8948

261400

NA
0.8945

25179

(Tp_CCH7) COG5152
0.8897

263489

WD40
0.8896

6472

hypothetical protein
0.8895

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPN7 superfamily 26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher... - 148.873 3.37E-42 167 - 325 superfamily 256084
RPN7 superfamily 26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher... - 148.873 3.37E-42 167 - 325 superfamily 256084
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 68.0268 5.45E-14 341 - 445 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 68.0268 5.45E-14 341 - 445 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9910 PHATRDRAFT_9910 170132 216466 239467 Cre13.g581450.t1.2 AT4G24820.2 253936

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0006118 GO:0016020 GO:0016491 GO:0004298 GO:0004299 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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