34276 Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34276	chr_5	Chloroa_b-bind	891443	891946	-	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps34276.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0223	0.11	0.0000034 0.000084

Most Highly Correlated Transcripts

270222 0.9965	bd218 (bd218) Chloroa_b-bind superfamily 0.9943	4883 (Lhcr14) fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type 0.9898	33131 Chloroa_b-bind 0.987	23808 hypothetical protein 0.9857	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9815
36081 Chloroa_b-bind 0.9814	22747 (Lhcr10) fucoxanthin chlorophyll a/c light-harvesting protein 0.9806	31749 Chloroa_b-bind superfamily 0.9803	bd1820 (bd1820) Fasciclin 0.9796

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	100.459	3.22E-27	35 - 154	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	100.459	3.22E-27	35 - 154	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9799	PHATRDRAFT_9799	269918	182358	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

Add comment

Log in to post comments