35624 Glo_EDI_BRP_like_18Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35624	chr_7	Glo_EDI_BRP_like_18	527905	528327	+	Glo_EDI_BRP_like_18

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446231	Thaps35624.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0172

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0028	0.44

Most Highly Correlated Transcripts

16075 tpt 0.8972	26991 GRX_GRXh_1_2_like 0.8942	4402 Rotamase 0.8857	19977 TRX_family 0.8853	36641 Aldolase_Class_I superfamily 0.8751	5812 hypothetical protein 0.8725
2832 hypothetical protein 0.8714	4578 hypothetical protein 0.8626	3768 hypothetical protein 0.8554	37934 GRX_PICOT_like 0.855

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Glo_EDI_BRP_like_18		This conserved domain belongs to a superfamily including the bleomycin resistance protein,...	cl14632	215.962	1.04E-72	1 - 126	specific	176705
Glo_EDI_BRP_like superfamily		This domain superfamily is found in a variety of structurally related metalloproteins, including...	-	215.962	1.04E-72	1 - 126	superfamily	265436

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_38884	PHATRDRAFT_38884	223684	225825	Not available	Cre12.g547400.t1.1	Not available	287152

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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