36563 MYSc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36563 chr_11a MYSc 105557 109484 + MYSc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444525 Thaps36563.4, Thaps36563.3, Thaps36563.2, Thaps36563.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0321

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

33984

PKc_like superfamily
0.9421

12500

SNF2_N
0.9404

37638

HrpA
0.9357

264679

Syja_N
0.928

30950

Glyco_hydro_47
0.9258

168

(RPB1) PRK08566
0.9254

35929

(MAPKKK) S_TKc
0.9241

262826

DUF3608 superfamily
0.9225

22258

PUB
0.9222

262171

CAP_ED
0.9208

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger... cl00286 762.961 0 98 - 818 specific 238071
Motor_domain superfamily Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the... - 762.961 0 98 - 818 superfamily 260327

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_432 PHATRDRAFT_432 Not available Not available 62642 Cre16.g658650.t1.1 AT2G31900.1 258484

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003774 GO:0005524 GO:0016459 -

GO:0003774

motor activity

Details: 
Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016459

myosin complex

Details: 
A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes.
GO Category: 
CC

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