36979 PIN_Fcf1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36979	chr_12	PIN_Fcf1	381378	381969	-	PIN_Fcf1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447521	Thaps36979.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0265	0.39	0.0021 16000

Most Highly Correlated Transcripts

37156 PLN02369 0.8759	17145 WBS_methylT 0.8627	262775 RBFA 0.8565	269352 WD40 superfamily 0.8544	32325 ABC_ATPase superfamily 0.8542	20583 hypothetical protein 0.8522
5906 hypothetical protein 0.8519	22099 hypothetical protein 0.8511	22334 hypothetical protein 0.8501	30862 PTZ00368 0.8487

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PIN_Fcf1		PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs; Fcf1/...	cl14812	274.116	2.37E-94	54 - 188	specific	189034
PIN_SF superfamily		PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a...	-	274.116	2.37E-94	54 - 188	superfamily	265458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_27263	PHATRDRAFT_27263	234849	182755	121169	Cre16.g679450.t1.2	AT2G46230.1	345116

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

Not available -

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