37156 PLN02369
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37156 chr_13 PLN02369 331702 333730 - PLN02369

Synonyms

NCBI ID Ensembl Genomes exon ID
7453011 Thaps37156.1, Thaps37156.3, Thaps37156.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0228

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0196
 0.36

Most Highly Correlated Transcripts

bd96

(bd96) eIF-3_zeta
0.9121

13308

PLN02948
0.9056

bd1876

(bd1876) NatB_MDM20 superfamily
0.9044

bd190

(bd190) SrmB
0.904

40044

(MAP1) PLN03158
0.902

5053

hypothetical protein
0.9015

13378

PRK13762
0.8917

34596

WD40
0.8917

22965

SrmB
0.8901

bd1709

(bd1709) NA
0.8887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRTases_typeI Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... cl00309 68.1912 1.15E-13 483 - 536 specific 206754
PRTases_typeI superfamily Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... - 68.1912 1.15E-13 483 - 536 superfamily 260342
Pribosyltran_N superfamily N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal... - 130.612 5.83E-36 273 - 388 superfamily 258077
Pribosyltran_N superfamily N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal... - 130.612 5.83E-36 273 - 388 superfamily 258077
PLN02369 ribose-phosphate pyrophosphokinase - 396.757 3.74E-134 282 - 592 multi-dom 215209

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_4059 PHATRDRAFT_4059 188245 191595 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0009116 GO:0004749 GO:0009165 -

GO:0009116

nucleoside metabolic process

Details: 
The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
GO Category: 
BP

GO:0004749

ribose phosphate diphosphokinase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+).
GO Category: 
MF

GO:0009165

nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
GO Category: 
BP

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