37585 MECDP_synthaseThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37585	chr_15	MECDP_synthase	273817	274822	+	MECDP_synthase

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps37585.2, Thaps37585.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0032

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0274	0.39	0.0012 6

Most Highly Correlated Transcripts

37585 MECDP_synthase 1	9097 hypothetical protein 0.9513	6402 hypothetical protein 0.9147	6483 hypothetical protein 0.9071	6652 hypothetical protein 0.901	2515 nst superfamily 0.8991
10157 hypothetical protein 0.8964	1094 hypothetical protein 0.8952	6889 hypothetical protein 0.8928	8954 hypothetical protein 0.8919

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MECDP_synthase		MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene,...	cl10030	197.282	2.19E-63	75 - 234	specific	100025
MECDP_synthase superfamily		MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene,...	-	197.282	2.19E-63	75 - 234	superfamily	263950

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12330	PHATRDRAFT_12330	267578	193010	122012	Cre12.g503550.t1.2	AT1G63970.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008685 GO:0016114 -

Add comment

Log in to post comments