37988 (ARF1) Ras_like_GTPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37988 chr_17 (ARF1) Ras_like_GTPase superfamily 417871 418572 + Ras_like_GTPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442128 Thaps37988.2, Thaps37988.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0372

Most Highly Correlated Transcripts

30919

Longin
0.8696

5623

COG0637
0.8634

22816

hypothetical protein
0.8441

7220

WLM superfamily
0.8438

263997

(APA1) Adaptin_N
0.8431

882

hypothetical protein
0.8399

5584

P4Hc
0.8375

bd463

(bd463) Aa_trans superfamily
0.8344

262671

hypothetical protein
0.834

5717

(Tp_CBF/NF2) H4 superfamily
0.8325

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 267.737 7.84E-92 19 - 176 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 92.3311 3.94E-23 13 - 179 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8659 PHATRDRAFT_8659 186009 300375 Not available Cre12.g535900.t1.1 Not available 314739

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0006886 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

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