38466 SpoU_methylase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38466 chr_20 SpoU_methylase superfamily 505688 506408 - SpoU_methylase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448552 Thaps38466.1, Thaps38466.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0267

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0097
 0.39

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9252

267979

HCO3_cotransp superfamily
0.9077

31259

HA
0.8887

4517

hypothetical protein
0.8885

39062

SpoU
0.8854

32064

Mito_carr
0.8844

36007

Aldolase_II superfamily
0.8829

38472

HA2
0.8798

20825

hypothetical protein
0.879

2622

hypothetical protein
0.8757

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 87.1796 8.30E-22 52 - 189 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12053 PHATRDRAFT_12053 234137 155658 46022 Cre05.g238950.t1.1 AT4G15520.1 414447

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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