38815 (Rpb8) RNA_pol_Rpb8 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38815 chr_23 (Rpb8) RNA_pol_Rpb8 superfamily 284217 284678 + RNA_pol_Rpb8 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448892 Thaps38815.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0118

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

12063

hypothetical protein
0.8982

bd692

(bd692) NA
0.8715

11063

hypothetical protein
0.8541

bd1835

(bd1835) NA
0.8535

12095

hypothetical protein
0.8493

bd1237

(bd1237) 3a01204
0.8486

bd788

(bd788) NA
0.8232

8830

(rfC_1) PLN03025
0.816

8831

UAA
0.8154

264907

(SelD) selD
0.8146

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpb8 superfamily - 146.847 13 - 152 superfamily 261420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22597 PHATRDRAFT_22597 268152 207207 226344 Cre02.g102800.t1.2 AT1G54250.1 355025

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0006350 GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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