40001 PRK05433
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40001 chr_3 PRK05433 1551889 1554396 + PRK05433

Synonyms

NCBI ID Ensembl Genomes exon ID
7451309 Thaps40001.3, Thaps40001.1, Thaps40001.4, Thaps40001.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0239
 0.34

Most Highly Correlated Transcripts

267979

HCO3_cotransp superfamily
0.9224

260833

Uup
0.8949

268443

SAICAR_synt_Sc
0.8856

40200

TRX_reduct
0.8808

6010

AP_muniscins_like_MHD
0.8735

6028

NA
0.8701

ThpsCp134

(rpl34) ribosomal protein L34
0.8668

6610

hypothetical protein
0.8653

24363

SbcC
0.865

6760

(Tp_sigma70.7) regulator [Rayko]
0.8608

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LepA LepA also known as Elongation Factor 4 (EF4); LepA (also known as elongation factor 4, EF4) belongs... cl17170 376.874 5.69E-127 92 - 271 specific 206677
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 376.874 5.69E-127 92 - 271 superfamily 266525
lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the... cl02787 146.83 7.77E-42 279 - 364 specific 239670
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 146.83 7.77E-42 279 - 364 superfamily 261449
lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in... cl02785 139.549 3.94E-39 506 - 585 specific 239680
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 139.549 3.94E-39 506 - 585 superfamily 261447
LepA_C superfamily GTP-binding protein LepA C-terminus; This family consists of the C-terminal region of several pro-... - 163.534 1.27E-47 593 - 700 superfamily 203441
LepA_C superfamily GTP-binding protein LepA C-terminus; This family consists of the C-terminal region of several pro-... - 163.534 1.27E-47 593 - 700 superfamily 203441
PRK05433 GTP-binding protein LepA; Provisional - 1119.73 0 89 - 703 multi-dom 235462

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22622 PHATRDRAFT_22622 181961 318170 428578 Cre03.g165000.t1.2 AT5G08650.1 361469

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0007264 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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