40489 UAAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40489	chr_4	UAA	2030617	2031796	-	UAA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451363	Thaps40489.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0011

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0025	0.38	0.0000000018 0.000000059

Most Highly Correlated Transcripts

28125 PLN00203 0.888	36235 p450 superfamily 0.8446	268908 Trans_IPPS_HH 0.8431	268592 VDE superfamily 0.8422	17214 PLN02512 0.8334	36669 TPT 0.8176
33663 PLN02649 0.8095	262279 PT_UbiA_chlorophyll 0.8087	261232 URO-D 0.8082	31169 PRX_BCP 0.808

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UAA		UAA transporter family; This family includes transporters with a specificity for UDP-N-...	-	161.234	1.19E-46	14 - 312	multi-dom	254807

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13167	PHATRDRAFT_13167	272070	286400	459566	Cre01.g032050.t1.2	Not available	322645

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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