40586 (GMD1) PLN02653
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40586 chr_5 (GMD1) PLN02653 154902 156857 - PLN02653

Synonyms

NCBI ID Ensembl Genomes exon ID
7448453 Thaps40586.2, Thaps40586.1, Thaps40586.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0212

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

26991

GRX_GRXh_1_2_like
0.8839

31535

cyclophilin_ABH_like
0.8839

262455

COG1272
0.8743

3448

Guanylate_kin
0.8733

263742

Synaptobrevin
0.8688

11575

hypothetical protein
0.8671

4399

Methyltransf_22 superfamily
0.8665

11479

hypothetical protein
0.8629

11175

Mitofilin
0.8605

23399

PTZ00184
0.8566

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GDP_MD_SDR_e GDP-mannose 4,6 dehydratase, extended (e) SDRs; GDP-mannose 4,6 dehydratase, a homodimeric SDR,... cl09931 531.403 0 6 - 346 specific 187570
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 531.403 0 6 - 346 superfamily 263925
PLN02653 GDP-mannose 4,6-dehydratase - 637.202 0 1 - 357 multi-dom 178259

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25417 PHATRDRAFT_25417 206067 263429 434640 Not available AT5G66280.1 486654

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0008152 GO:0016491 GO:0008446 GO:0009058 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0008446

GDP-mannose 4,6-dehydratase activity

Details: 
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
GO Category: 
MF

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

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