40962 (RPN8) PLN03246
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40962 chr_6 (RPN8) PLN03246 580355 581515 - PLN03246

Synonyms

NCBI ID Ensembl Genomes exon ID
7451185 Thaps40962.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

516

(RPT5) RPT1
0.9499

261400

NA
0.9359

28028

RPN6
0.9248

6693

hypothetical protein
0.9221

26868

(PSA3) proteasome_alpha_type_3
0.9197

31829

CBS_like
0.9131

262271

PIP5K
0.9116

26991

GRX_GRXh_1_2_like
0.9116

36669

TPT
0.9103

38331

YIP1 superfamily
0.9085

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S... cl13996 466.675 1.18E-165 24 - 315 specific 163693
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 466.675 1.18E-165 24 - 315 superfamily 265414
PLN03246 26S proteasome regulatory subunit; Provisional - 513.134 0 17 - 334 multi-dom 215645

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17259 PHATRDRAFT_17259 176238 206303 414266 Cre06.g278256.t1.1 AT3G11270.1 349849

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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