41246 PRK14333
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41246 chr_6 PRK14333 2000043 2002787 - PRK14333

Synonyms

NCBI ID Ensembl Genomes exon ID
7446370 Thaps41246.4, Thaps41246.3, Thaps41246.2, Thaps41246.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0325

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0070
 0.44

Most Highly Correlated Transcripts

bd446

(bd446) HrpA
0.9184

4108

hypothetical protein
0.9178

bd1387

(bd1387) psbE
0.899

bd1652

(bd1652) ABC_ATPase superfamily
0.8909

bd1465

(bd1465) PKc_like superfamily
0.8852

bd392

(bd392) DEXDc
0.8849

bd1304

(bd1304) Ycf4
0.8812

4424

LabA_like
0.88

bd2073

(bd2073) psbB
0.8757

bd1820

(bd1820) Fasciclin
0.8757

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 64.2769 8.18E-12 533 - 739 superfamily 100105
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 64.2769 8.18E-12 533 - 739 superfamily 100105
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 126.462 4.86E-34 381 - 489 superfamily 250224
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 126.462 4.86E-34 381 - 489 superfamily 250224
PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional - 648.649 0 378 - 823 multi-dom 237677

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14552 PHATRDRAFT_14552 148212 224359 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0003824 GO:0005506 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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