416 (rfC_3) rfcThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
416	chr_4	(rfC_3) rfc	1907050	1908297	-	rfc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443775	Thaps416.2, Thaps416.1, Thaps416.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0186

Most Highly Correlated Transcripts

20688 (Tp_CBF/NF5) regulator [Rayko] 0.9299	1137 hypothetical protein 0.9165	723 (rfC2) rfc 0.9158	25025 PHear_NECAP 0.9103	4192 hypothetical protein 0.9094	262994 COG0637 0.9086
1215 E1_enzyme_family superfamily 0.9053	260829 GalK 0.9026	40148 (UBC2) UBCc 0.9019	36419 RabGAP-TBC 0.8965

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	cl18944	99.1427	4.15E-25	34 - 173	specific	99707
AAA superfamily	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	99.1427	4.15E-25	34 - 173	superfamily	267297
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	60.2128	9.87E-12	252 - 339	superfamily	254867
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	60.2128	9.87E-12	252 - 339	superfamily	254867
rfc	replication factor C small subunit; Reviewed	-	321.052	6.60E-108	18 - 334	multi-dom	234763

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9547	PHATRDRAFT_9547	196471	7408	424080	Cre06.g251800.t1.2	AT1G21690.1	551952

KEGG

KEGG description	KEGG Pathway
Mismatch repair	map03430

GO Terms

GO:0003677 GO:0005663 GO:0006260 GO:0000166 GO:0017111 GO:0005524 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0005663

DNA replication factor C complex

Details:

A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase.

GO Category:

GO:0006260

DNA replication

Details:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0000166

nucleotide binding

Details:

Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

GO Category:

GO:0017111

nucleoside-triphosphatase activity

Details:

Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

416 (rfC_3) rfc
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0005663

GO:0006260

GO:0000166

GO:0017111

GO:0005524

GO:0003887

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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