40148 (UBC2) UBCcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40148	chr_4	(UBC2) UBCc	72517	73684	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446724	Thaps40148.1, Thaps40148.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0009

Most Highly Correlated Transcripts

18462 EMP24_GP25L 0.9256	30701 PRK05279 0.9224	37934 GRX_PICOT_like 0.917	5105 hypothetical protein 0.9154	269624 TIM_phosphate_binding superfamily 0.9136	5137 hypothetical protein 0.9125
3341 hypothetical protein 0.9116	36964 PLN02716 0.9113	25068 hypothetical protein 0.9111	26002 2Fe-2S_thioredx 0.9099

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	187.024	6.61E-61	9 - 148	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	187.024	6.61E-61	9 - 148	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_36198	PHATRDRAFT_36198	272129	310911	Not available	Cre01.g026600.t1.2	AT1G78870.2	355843

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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