43076 eraThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
43076	chr_22	era	747028	748683	-	era

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449409	Thaps43076.4, Thaps43076.2, Thaps43076.3, Thaps43076.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0059

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0108	0.45	0.00031 42

Most Highly Correlated Transcripts

bd392 (bd392) DEXDc 0.9082	25040 NA 0.8813	bd624 (bd624) Glyco_transf_34 superfamily 0.8788	36641 Aldolase_Class_I superfamily 0.8706	bd1192 (bd1192) Acyl_ACP_Desat 0.865	1934 hypothetical protein 0.865
6028 NA 0.8646	24423 (rpl23) PTZ00054 0.8628	24410 (RL32) Ribosomal_L32_L32e 0.8537	25729 Glyco_tranf_GTA_type superfamily 0.8528

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	120.259	2.50E-32	106 - 273	superfamily	266525
KH_2		KH domain; KH domain.	cl00098	66.0243	1.04E-13	335 - 399	specific	254331
KH-II superfamily		KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found...	-	66.0243	1.04E-13	335 - 399	superfamily	260189
era		GTPase Era; Reviewed	-	295.803	1.89E-97	104 - 410	multi-dom	234624

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
32481	PHATRDRAFT_21922	PHATRDRAFT_21922	190835	295431	424400	Cre02.g141706.t1.1	AT5G66470.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0005525 -

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