25729 Glyco_tranf_GTA_type superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25729 chr_22 Glyco_tranf_GTA_type superfamily 484667 487763 + Glyco_tranf_GTA_type superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442837 Thaps25729.2, Thaps25729.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0236

Most Highly Correlated Transcripts

38736

S_TKc
0.8609

15142

PT_UbiA_Cox10
0.8595

19421

HECT
0.8567

bd446

(bd446) HrpA
0.8565

22115

UbiE
0.8553

43076

era
0.8528

25708

hypothetical protein
0.8511

bd878

(bd878) AAT_like
0.8506

25279

TCP1_zeta
0.8492

24084

TCP1_delta
0.8475

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
W2_eIF2B_epsilon C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon; eIF2B is a... cl17013 142.783 9.95E-39 723 - 897 specific 211396
W2 superfamily C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of... - 142.783 9.95E-39 723 - 897 superfamily 266498
Glyco_tranf_GTA_type superfamily Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a... - 173.948 3.03E-49 19 - 330 superfamily 264347
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 76.0775 1.93E-16 464 - 536 superfamily 260227
GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/... - 67.7443 3.04E-12 68 - 535 multi-dom 224129

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46479 PHATRDRAFT_46479 194160 189252 459808 Cre12.g502200.t1.2 AT2G34970.1 488460

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0006446 GO:0003983 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0006446

regulation of translational initiation

Details: 
Any process that modulates the frequency, rate or extent of translational initiation.
GO Category: 
BP

GO:0003983

UTP:glucose-1-phosphate uridylyltransferase activity

Details: 
Catalysis of the reaction: alpha-D-glucose 1-phosphate + UTP = diphosphate + UDP-D-glucose.
GO Category: 
MF

Add comment

Log in to post comments