5760 SART-1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5760 chr_5 SART-1 2005067 2007679 - SART-1

Synonyms

NCBI ID Ensembl Genomes exon ID
7444900 Thaps5760.1, Thaps5760.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0247

Most Highly Correlated Transcripts

36372

S_TKc
0.9363

23560

hypothetical protein
0.9259

25288

Sec6 superfamily
0.9253

23469

Plus-3
0.9204

24604

hypothetical protein
0.92

5552

hypothetical protein
0.9158

22603

COG3899
0.9138

21268

zf-CXXC
0.9138

24891

zf-CW
0.9137

6823

COG2 superfamily
0.9137

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SART-1 SART-1 family; SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been... - 136.05 1.40E-33 28 - 800 multi-dom 251885

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45524 PHATRDRAFT_45524 270111 305151 Not available Not available AT5G16780.1 Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003910 -

GO:0003910

DNA ligase (ATP) activity

Details: 
Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 
MF

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