6770 (ACC) Carboxyl_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6770 chr_7 (ACC) Carboxyl_trans 456733 463808 - Carboxyl_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7446216 Thaps6770.1, Thaps6770.3, Thaps6770.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0237
 0.26

Most Highly Correlated Transcripts

bd1820

(bd1820) Fasciclin
0.9773

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9642

bd218

(bd218) Chloroa_b-bind superfamily
0.9572

bd1863

(bd1863) NA
0.9561

bd1387

(bd1387) psbE
0.9439

bd1304

(bd1304) Ycf4
0.9364

bd1342

(bd1342) psaL
0.9342

bd1350

(bd1350) psaF
0.9325

bd1441

(bd1441) ccsA
0.9178

bd1306

(bd1306) NA
0.9141

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 72.0635 9.68E-15 736 - 801 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 72.0635 9.68E-15 736 - 801 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 187.124 7.31E-53 220 - 453 superfamily 266590
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 120.281 5.40E-31 96 - 211 superfamily 249744
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 120.281 5.40E-31 96 - 211 superfamily 249744
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 119.885 7.27E-31 490 - 596 specific 251532
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 119.885 7.27E-31 490 - 596 superfamily 263607
Carboxyl_trans Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases.... - 529.508 2.03E-169 1470 - 2007 multi-dom 250315
ACC_central Acetyl-CoA carboxylase, central region; The region featured in this family is found in various... - 415.955 2.89E-126 802 - 1357 multi-dom 254731
AccC Biotin carboxylase [Lipid metabolism] - 395.482 2.49E-122 96 - 602 multi-dom 223516

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55209 PHATRDRAFT_55209 145710 318630 455280 Cre08.g373050.t1.1 AT1G36180.1 254604

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016874 GO:0009374 GO:0005524 GO:0008152 -

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0009374

biotin binding

Details: 
Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

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