7249 (ARF5) Ras_like_GTPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7249 chr_7 (ARF5) Ras_like_GTPase superfamily 1696358 1697098 - Ras_like_GTPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450581 Thaps7249.1, Thaps7249.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0181
 0.40

Most Highly Correlated Transcripts

270222

0.9621

18469

FkpA
0.9215

39278

ATP-synt_C
0.9206

269110

hypothetical protein
0.9149

23516

hypothetical protein
0.9138

269624

TIM_phosphate_binding superfamily
0.9081

2557

Cupin_8 superfamily
0.9047

37934

GRX_PICOT_like
0.9027

18462

EMP24_GP25L
0.9013

32745

PDI_a_family
0.9012

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 197.156 2.97E-64 18 - 174 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 90.0199 2.40E-22 12 - 155 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13157 PHATRDRAFT_13157 265053 192837 Not available Cre17.g708250.t1.2 AT3G49870.1 288558

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0006886 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

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