7887 Snf7 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7887	chr_9	Snf7 superfamily	176883	177875	-	Snf7 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449271	Thaps7887.3, Thaps7887.1, Thaps7887.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0107

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0054	0.44	0.00000000000079 0.044

Most Highly Correlated Transcripts

4774 hypothetical protein 0.887	24373 hypothetical protein 0.8754	30971 MIR 0.8684	268881 Mod_r superfamily 0.8658	26991 GRX_GRXh_1_2_like 0.8625	7607 Methyltransf_31 0.8619
7507 hypothetical protein 0.8553	20998 HOOK 0.855	26470 (GFS1) PLN02725 0.8536	3426 zf-DNL superfamily 0.8534

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Snf7 superfamily		Snf7; This family of proteins are involved in protein sorting and transport from the endosome to...	-	77.6646	4.97E-18	20 - 175	superfamily	267743

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31375	PHATRDRAFT_31375	272830	316963	419528	Cre03.g188500.t1.2	AT1G17730.1	513904

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0005554 -

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