26470 (GFS1) PLN02725
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26470 chr_22 (GFS1) PLN02725 730551 732364 - PLN02725

Synonyms

NCBI ID Ensembl Genomes exon ID
7448218 Thaps26470.1, Thaps26470.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0107

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0242
 0.38

Most Highly Correlated Transcripts

23024

hypothetical protein
0.9364

37934

GRX_PICOT_like
0.9361

26991

GRX_GRXh_1_2_like
0.9281

31751

PKCI_related
0.9249

39864

DEXDc superfamily
0.9215

41697

TRX_family
0.9209

36037

Trypsin_2
0.9183

268840

CBS_pair_10
0.9121

19977

TRX_family
0.9095

261982

(ACB1) ACBP
0.9073

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GDP_FS_SDR_e GDP-fucose synthetase, extended (e) SDRs; GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase)... cl09931 450.88 1.85E-159 13 - 316 specific 187550
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 450.88 1.85E-159 13 - 316 superfamily 263925
PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase - 543.137 0 15 - 324 multi-dom 178326

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15125 PHATRDRAFT_15125 273482 241200 206625 Not available AT1G17890.3 511177

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0008152 GO:0016491 GO:0050577 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050577

GDP-L-fucose synthase activity

Details: 
Catalysis of the reaction: GDP-L-fucose + NAD+ = GDP-4-dehydro-6-deoxy-D-mannose + NADH + H+.
GO Category: 
MF

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