6607 SpoU_methylase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6607 chr_6 SpoU_methylase superfamily 2023447 2023950 + SpoU_methylase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446570 Thaps6607.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0241

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0191
 0.44

Most Highly Correlated Transcripts

bd935

(bd935) TFIIS_I
0.8526

6555

hypothetical protein
0.7988

24812

MviM
0.783

32766

COG1936
0.7713

21519

hypothetical protein
0.7529

4330

DUF2256
0.7509

8546

60KD_IMP superfamily
0.7508

35911

COG1092
0.75

37539

cpn10
0.748

24038

hypothetical protein
0.7434

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 70.2308 6.07E-16 1 - 151 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 236394 196348 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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