693 (MHMT1) metH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
693 chr_12 (MHMT1) metH 64702 69172 - metH

Synonyms

NCBI ID Ensembl Genomes exon ID
7443225 Thaps693.4, Thaps693.1, Thaps693.3, Thaps693.2, Thaps693.5

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0378

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0037
 0.54

Most Highly Correlated Transcripts

bd1766

(bd1766) NA
0.8849

bd672

(bd672) NA
0.8784

bd1866

(bd1866) NA
0.8675

bd1464

(bd1464) CAP_ED
0.8622

bd894

(bd894) Peptidase_M14_like superfamily
0.8461

bd731

(bd731) NA
0.8438

20620

Nucleoporin_C superfamily
0.8408

bd624

(bd624) Glyco_transf_34 superfamily
0.8192

12899

AAA
0.8002

bd909

(bd909) NA
0.7993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an... cl00293 359.656 1.35E-114 764 - 996 specific 239020
B12-binding_like superfamily B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (... - 359.656 1.35E-114 764 - 996 superfamily 260332
MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent... cl00219 338.598 1.86E-106 455 - 711 specific 238381
Pterin_binding superfamily Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-... - 338.598 1.86E-106 455 - 711 superfamily 260272
MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and... cl14105 374.721 1.04E-118 103 - 416 specific 223719
S-methyl_trans superfamily Homocysteine S-methyltransferase; This is a family of related homocysteine S-methyltransferases... - 374.721 1.04E-118 103 - 416 superfamily 265425
Met_synt_B12 superfamily Vitamin B12 dependent methionine synthase, activation domain; Vitamin B12 dependent methionine... - 159.048 9.63E-44 1062 - 1343 superfamily 251646
metH B12-dependent methionine synthase; Provisional - 1985.8 0 89 - 1357 multi-dom 236539

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23399 PHATRDRAFT_23399 242870 213031 423073 Cre06.g250902.t1.1 AT3G25900.1 313428

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004156 GO:0009396 GO:0008898 GO:0008705 GO:0009086 GO:0005622 GO:0050897 -

GO:0004156

dihydropteroate synthase activity

Details: 
Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate + 4-aminobenzoate = diphosphate + dihydropteroate.
GO Category: 
MF

GO:0009396

folic acid-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
GO Category: 
BP

GO:0008898

homocysteine S-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine.
GO Category: 
MF

GO:0008705

methionine synthase activity

Details: 
Catalysis of the reaction: (6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine.
GO Category: 
MF

GO:0009086

methionine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
GO Category: 
BP

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0050897

cobalt ion binding

Details: 
Interacting selectively and non-covalently with a cobalt (Co) ion.
GO Category: 
MF

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