7322 PTZ00327
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7322 chr_7 PTZ00327 1916829 1918735 - PTZ00327

Synonyms

NCBI ID Ensembl Genomes exon ID
7443409 Thaps7322.1, Thaps7322.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

22240

eRF1
0.8892

9943

hypothetical protein
0.886

21491

hypothetical protein
0.8746

41178

hisG
0.8718

29166

Peptidase_S28 superfamily
0.8697

21723

DnaJ
0.8695

22276

Gar1
0.8667

9598

hypothetical protein
0.8647

28570

(L7Ae) Ribosomal_L7Ae superfamily
0.8613

6780

hypothetical protein
0.8603

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eIF2_gamma Gamma subunit of initiation factor 2 (eIF2 gamma); eIF2 is a heterotrimeric translation initiation... cl17170 336.162 1.33E-113 35 - 257 specific 206675
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 336.162 1.33E-113 35 - 257 superfamily 266525
eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic... cl02787 203.517 2.07E-63 258 - 375 specific 239659
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 203.517 2.07E-63 258 - 375 superfamily 261449
eIF2_C superfamily Initiation factor eIF2 gamma, C terminal; Members of this family, which are found in the initiation... - 145.028 7.01E-42 381 - 472 superfamily 150009
eIF2_C superfamily Initiation factor eIF2 gamma, C terminal; Members of this family, which are found in the initiation... - 145.028 7.01E-42 381 - 472 superfamily 150009
PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional - 816.55 0 1 - 483 multi-dom 240362

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42307 PHATRDRAFT_42307 261817 62730 62317 Cre02.g098450.t1.2 AT1G04170.1 325378

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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