22240 eRF1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22240 chr_4 eRF1 974987 976607 + eRF1

Synonyms

NCBI ID Ensembl Genomes exon ID
7453361 Thaps22240.1, Thaps22240.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

21491

hypothetical protein
0.9098

28570

(L7Ae) Ribosomal_L7Ae superfamily
0.9038

30691

AdoMet_MTases
0.8989

261109

NBD_sugar-kinase_HSP70_actin superfamily
0.8963

105

PTZ00248
0.8939

22276

Gar1
0.8922

22389

hypothetical protein
0.8901

2920

PRK05764
0.8901

7322

PTZ00327
0.8892

37083

PTZ00037
0.8875

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eRF1_2 superfamily eRF1 domain 2; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 162.843 5.36E-48 149 - 273 superfamily 251975
eRF1_2 superfamily eRF1 domain 2; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 162.843 5.36E-48 149 - 273 superfamily 251975
eRF1_1 superfamily eRF1 domain 1; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 143.507 7.10E-41 11 - 143 superfamily 251974
eRF1_1 superfamily eRF1 domain 1; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 143.507 7.10E-41 11 - 143 superfamily 251974
eRF1_3 superfamily eRF1 domain 3; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 112.259 5.13E-30 284 - 421 superfamily 251976
eRF1_3 superfamily eRF1 domain 3; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 112.259 5.13E-30 284 - 421 superfamily 251976
eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] - 462.22 3.68E-160 14 - 423 multi-dom 224420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50796 PHATRDRAFT_50796 192091 245855 420966 Cre13.g587050.t1.2 AT3G26618.1 547793

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0005737 GO:0006415 GO:0016149 -

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006415

translational termination

Details: 
The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO Category: 
BP

GO:0016149

translation release factor activity, codon specific

Details: 
A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
GO Category: 
MF

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