7716 (Tp_CCCH27_RING95) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7716 chr_8 (Tp_CCCH27_RING95) regulator [Rayko] 947466 948422 + regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7449856 Thaps7716.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0217

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0130
 0.40

Most Highly Correlated Transcripts

262525

(PSB5) proteasome_beta_type_5
0.8954

23024

hypothetical protein
0.8942

3730

hypothetical protein
0.8924

18091

Peptidase_S9 superfamily
0.892

37934

GRX_PICOT_like
0.8894

4108

hypothetical protein
0.8836

30971

MIR
0.8774

25662

hypothetical protein
0.8763

261982

(ACB1) ACBP
0.8746

262994

COG0637
0.874

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre06.g278136.t1.1 AT3G08505.1 555909

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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