8811 RPE65 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8811	chr_11a	RPE65 superfamily	593474	595277	-	RPE65 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444469	Thaps8811.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0134

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0047	0.45

Most Highly Correlated Transcripts

30701 PRK05279 0.8557	267979 HCO3_cotransp superfamily 0.8473	268443 SAICAR_synt_Sc 0.8278	38707 Aldolase_Class_I superfamily 0.8245	35136 NA 0.8229	5485 hypothetical protein 0.8217
41655 Chloroa_b-bind 0.8184	39941 PRK13357 0.8152	40200 TRX_reduct 0.8115	13393 PLN02321 0.8088

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RPE65 superfamily		Retinal pigment epithelial membrane protein; This family represents a retinal pigment epithelial...	-	294.524	2.97E-92	67 - 586	superfamily	263961

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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