957 WRN_exo
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
957 chr_1 WRN_exo 254050 255366 + WRN_exo

Synonyms

NCBI ID Ensembl Genomes exon ID
7449796 Thaps957.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0250

Most Highly Correlated Transcripts

12899

AAA
0.8976

263722

FIG superfamily
0.8935

5692

Peptidase_C15 superfamily
0.8894

4772

hypothetical protein
0.8801

32782

MPN superfamily
0.8785

261040

RsuA
0.8783

24619

2-Hacid_dh_1
0.8759

37497

cysE
0.8749

7683

DUF3395 superfamily
0.8747

5760

SART-1
0.8743

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins; WRN is a unique RecQ... cl10012 117.294 3.82E-31 121 - 328 specific 176653
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 117.294 3.82E-31 121 - 328 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 246263 288865 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005622 GO:0008408 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008408

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

Add comment

Log in to post comments