9591 efThoc1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9591 chr_13 efThoc1 superfamily 852813 855838 - efThoc1 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450509 Thaps9591.2, Thaps9591.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0259

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

23568

hypothetical protein
0.9106

1693

hypothetical protein
0.8929

20800

XRN_N superfamily
0.8775

21860

PRP40
0.8736

33033

YSH1
0.8732

22757

(Tp_Hox6a) zf-CW
0.8665

24216

hypothetical protein
0.8645

8503

DUF2431
0.863

12943

NARP1
0.863

23095

UBCc
0.8626

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
efThoc1 superfamily THO complex subunit 1 transcription elongation factor; The THO complex plays a role in coupling... - 154.122 1.02E-39 211 - 662 superfamily 256757

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47759 PHATRDRAFT_47759 Not available Not available 453346 Not available AT5G09860.1 540491

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0004176 GO:0004252 GO:0006508 -

GO:0004176

ATP-dependent peptidase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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