13794 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13794 chr_4 WD40 177577 178674 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7442046 Thaps13794.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0167

Most Highly Correlated Transcripts

270222

0.9531

30701

PRK05279
0.9529

35136

NA
0.9522

33348

IGPD superfamily
0.9446

263946

eukaryotic_phosphagen_kinases
0.9363

36419

RabGAP-TBC
0.9329

6727

Isy1
0.9327

36007

Aldolase_II superfamily
0.9326

6997

hypothetical protein
0.9322

28523

RagC_like
0.9288

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 180.994 7.72E-54 67 - 365 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 180.994 7.72E-54 67 - 365 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 136.757 3.41E-36 64 - 365 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54743 PHATRDRAFT_54743 180356 322383 463519 Cre04.g226450.t1.1 AT1G10580.1 543227

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0006118 GO:0003847 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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