1383 (PDS1) phytoene_desat
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1383 chr_1 (PDS1) phytoene_desat 1371105 1373101 - phytoene_desat

Synonyms

NCBI ID Ensembl Genomes exon ID
7442929 Thaps1383.1, Thaps1383.2, Thaps1383.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0287
 0.36

Most Highly Correlated Transcripts

31829

CBS_like
0.9394

4171

hypothetical protein
0.9275

5135

Rubis-subs-bind
0.9197

268266

KBL_like
0.9177

37838

M32_Taq
0.9143

20664

hypothetical protein
0.9035

268592

VDE superfamily
0.9024

2515

nst superfamily
0.9021

6757

hypothetical protein
0.8999

6594

hypothetical protein
0.8994

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. cl19134 64.8247 5.59E-13 91 - 157 specific 257775
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 64.8247 5.59E-13 91 - 157 superfamily 267487
phytoene_desat phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a... - 698.905 0 88 - 547 multi-dom 131778

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre12.g509650.t1.2 AT4G14210.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006118 GO:0016491 GO:0016937 GO:0017099 GO:0019109 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016937

short-branched-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue.
GO Category: 
MF

GO:0017099

very-long-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
GO Category: 
MF

GO:0019109

NA

Details: 
NA
GO Category: 
NA

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