16384 SIR2 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16384 chr_5 SIR2 superfamily 586306 587474 - SIR2 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449723 Thaps16384.1, Thaps16384.4, Thaps16384.3, Thaps16384.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0084

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0042
 0.43

Most Highly Correlated Transcripts

bd1863

(bd1863) NA
0.8275

bd208

(bd208) DUF3529
0.8106

2487

hypothetical protein
0.8045

bd1658

(bd1658) NA
0.7976

bd1078

(bd1078) NA
0.7901

bd668

(bd668) NA
0.7786

bd997

(bd997) rpoC1
0.7768

268582

(DHC2) recQ_fam
0.7741

bd624

(bd624) Glyco_transf_34 superfamily
0.7737

bd687

(bd687) NA
0.7733

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SIR2 superfamily SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze... - 271.812 5.18E-91 27 - 267 superfamily 260250

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8827 PHATRDRAFT_8827 152531 154740 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005677 GO:0006342 GO:0006355 GO:0004407 GO:0008418 GO:0008759 GO:0009017 GO:0016811 GO:0017159 GO:0018748 GO:0018749 GO:0047419 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005677

chromatin silencing complex

Details: 
Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing.
GO Category: 
CC

GO:0006342

chromatin silencing

Details: 
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0004407

histone deacetylase activity

Details: 
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.
GO Category: 
MF

GO:0008418

protein-N-terminal asparagine amidohydrolase activity

Details: 
Catalysis of the reaction: protein-L-asparagine + H2O = protein-L-aspartate + NH3. This reaction is the deamidation of an N-terminal asparagine residue in a peptide or protein.
GO Category: 
MF

GO:0008759

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity

Details: 
Catalysis of the removal of an acetyl group from the 2-N position of glucosamine in the lipid A precursor UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine.
GO Category: 
MF

GO:0009017

succinylglutamate desuccinylase activity

Details: 
Catalysis of the reaction: N-succinyl-L-glutamate + H(2)O = L-glutamate + succinate.
GO Category: 
MF

GO:0016811

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Details: 
Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide.
GO Category: 
MF

GO:0017159

pantetheine hydrolase activity

Details: 
Catalysis of the reaction: (R)-pantetheine + H(2)O = (R)-pantothenate + cysteamine.
GO Category: 
MF

GO:0018748

iprodione amidohydrolase activity

Details: 
Catalysis of the reaction: iprodione + OH- = 3,5-dichlorophenylcarboximide + N-isopropylcarbamate.
GO Category: 
MF

GO:0018749

(3,5-dichlorophenylurea)acetate amidohydrolase activity

Details: 
Catalysis of the reaction: (3,5-dichlorophenylurea)acetate + OH- = 3,5-dichloroaniline + N-carboxyglycine.
GO Category: 
MF

GO:0047419

N-acetylgalactosamine-6-phosphate deacetylase activity

Details: 
Catalysis of the reaction: H2O + N-acetyl-D-galactosamine 6-phosphate = acetate + D-galactosamine 6-phosphate.
GO Category: 
MF

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