1743 Smc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1743 chr_1 Smc 2310724 2314825 + Smc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0373

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

9851

Smc
0.8885

24089

hypothetical protein
0.8722

21138

AAA_34 superfamily
0.8694

21425

hypothetical protein
0.8679

5400

Lactamase_B superfamily
0.867

7967

2A0106
0.8667

7800

hypothetical protein
0.8656

23994

UCH
0.8626

1217

(Tp_Myb1R2) SANT_TRF
0.8622

9187

hypothetical protein
0.8573

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC6_euk ATP-binding cassette domain of eukaryotic SM6 proteins; The structural maintenance of chromosomes (... cl17201 143.122 3.45E-38 1095 - 1192 specific 213243
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 110.765 5.26E-27 102 - 186 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 110.765 5.26E-27 102 - 186 superfamily 266551
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 194.548 1.10E-50 102 - 1170 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28237 PHATRDRAFT_28237 177172 249877 454491 Cre12.g525050.t1.1 AT5G61460.1 564902

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0005694 GO:0051276 GO:0016887 GO:0008570 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0051276

chromosome organization

Details: 
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
GO Category: 
BP

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0008570

NA

Details: 
NA
GO Category: 
NA

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