21138 AAA_34 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21138	chr_2	AAA_34 superfamily	310735	317030	-	AAA_34 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452197	Thaps21138.11, Thaps21138.2, Thaps21138.14, Thaps21138.13, Thaps21138.8, Thaps21138.6, Thaps21138.4, Thaps21138.9, Thaps21138.10, Thaps21138.16, Thaps21138.5, Thaps21138.12, Thaps21138.7, Thaps21138.3, Thaps21138.1, Thaps21138.15

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0076

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0043	0.36	170 25000

Most Highly Correlated Transcripts

7876 hypothetical protein 0.8929	22848 COG4251 0.8764	10002 Solute_trans_a superfamily 0.8717	1743 Smc 0.8694	9382 hypothetical protein 0.8682	2910 Motor_domain superfamily 0.8667
24089 hypothetical protein 0.8628	6552 hypothetical protein 0.8531	21425 hypothetical protein 0.8513	20977 COG0398 0.8509

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_34 superfamily		P-loop containing NTP hydrolase pore-1; P-loop containing NTP hydrolase pore-1.	-	361.133	2.97E-113	83 - 460	superfamily	258139
Helicase_C_4 superfamily		Helicase_C-like; Strawberry notch proteins carry DExD/H-box groups and Helicase_C domains. These...	-	259.424	1.42E-77	822 - 1219	superfamily	258138
Helicase_C_4 superfamily		Helicase_C-like; Strawberry notch proteins carry DExD/H-box groups and Helicase_C domains. These...	-	259.424	1.42E-77	822 - 1219	superfamily	258138

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	197511	328811	462026	Cre01.g053250.t1.1	AT1G79350.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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