17492 COG1179
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17492 chr_23 COG1179 329160 330010 + COG1179

Synonyms

NCBI ID Ensembl Genomes exon ID
7442670 Thaps17492.2, Thaps17492.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0100
 0.39

Most Highly Correlated Transcripts

22847

hypothetical protein
0.8921

22999

hypothetical protein
0.8872

bd1934

(bd1934) NA
0.8857

14890

Cupin_8 superfamily
0.8661

bd643

(bd643) NA
0.8643

23048

hypothetical protein
0.8581

260906

pyridoxal_pyridoxamine_kinase
0.8564

22841

Glyco_transf_49 superfamily
0.8527

23966

hypothetical protein
0.8453

13308

PLN02948
0.8411

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical... cl17196 222.095 7.09E-72 1 - 237 specific 238384
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 222.095 7.09E-72 1 - 237 superfamily 266547
COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [... - 238.737 7.88E-78 1 - 244 multi-dom 224100

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35363 PHATRDRAFT_35363 150085 198523 196417 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0004842 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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