18198 RRM_NIFK_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18198 chr_1 RRM_NIFK_like 2444542 2445309 - RRM_NIFK_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7445108 Thaps18198.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0276
 0.21

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9473

14597

SrmB
0.9375

36406

Ribosomal_L7_archeal_euk
0.9321

39953

SrmB
0.932

32807

DEADc
0.9309

31465

Brix
0.9265

32414

PRK00093
0.9257

21553

Nop16 superfamily
0.9254

22200

hypothetical protein
0.9247

269776

Ribosomal_L1
0.9234

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_NIFK_like RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and... cl17169 127.691 2.27E-37 3 - 76 specific 240753
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 127.691 2.27E-37 3 - 76 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45356 PHATRDRAFT_45356 257488 169800 63394 Cre08.g368500.t1.2 AT5G04600.1 555443

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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