18462 EMP24_GP25LThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
18462	chr_4	EMP24_GP25L	547141	547887	-	EMP24_GP25L

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452603	Thaps18462.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0208

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0173	0.35	0.023 0.015

Most Highly Correlated Transcripts

270222 0.9759	25068 hypothetical protein 0.9567	30701 PRK05279 0.9403	264177 P4Hc 0.9363	39497 Sar1 0.9341	268840 CBS_pair_10 0.9336
261982 (ACB1) ACBP 0.9294	21249 hypothetical protein 0.9286	9417 DUF1777 0.9259	1165 HAM1 0.9257

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EMP24_GP25L superfamily		emp24/gp25L/p24 family/GOLD; Members of this family are implicated in bringing cargo forward from...	-	101.189	3.09E-26	130 - 243	superfamily	250365
EMP24_GP25L superfamily		emp24/gp25L/p24 family/GOLD; Members of this family are implicated in bringing cargo forward from...	-	101.189	3.09E-26	130 - 243	superfamily	250365

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46215	PHATRDRAFT_46215	154835	239039	Not available	Not available	AT1G57620.1	333832

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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