PHATRDRAFT_15862 (NMD3)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_15862	chr_22	(NMD3)	131577	133166	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0255	0.14	750 160

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	241.443	9.41E-76	19 - 253	superfamily	252919
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	241.443	9.41E-76	19 - 253	superfamily	252919
NMD3		NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and...	-	175.27	1.44E-49	15 - 402	multi-dom	224416

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29018		Not available	203201	296979	255655	Cre15.g640250.t1.2	AT2G03820.1	480926

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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