PHATRDRAFT_44955 4-hydroxy-3-methylbut-2-en-1-yl diphosphatechloroplast precursor (1-hydroxy-2-methyl-2--butenyl 4-diphosphate synthase) (PLN02925)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44955	chr_5	4-hydroxy-3-methylbut-2-en-1-yl diphosphatechloroplast precursor (1-hydroxy-2-methyl-2--butenyl 4-...	765110	767672	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0084

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0041	0.40	4400 8200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GcpE superfamily		GcpE protein; In a variety of organisms, including plants and several eubacteria, isoprenoids are...	-	169.999	6.18E-47	599 - 737	superfamily	267853
GcpE superfamily		GcpE protein; In a variety of organisms, including plants and several eubacteria, isoprenoids are...	-	169.999	6.18E-47	599 - 737	superfamily	267853
PLN02925		4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	-	1233.47	0	2 - 742	multi-dom	178513

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29228		Not available	259614	287456	442353	Cre12.g490350.t1.1	AT5G60600.3	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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