20220 UBQ superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20220 chr_22 UBQ superfamily 454659 459305 - UBQ superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442834 Thaps20220.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0160

Most Highly Correlated Transcripts

bd870

(bd870) LRR_RI superfamily
0.9119

8253

Lipase superfamily
0.8629

261018

PDEase_I
0.8532

269843

(ZFP12) hypothetical protein
0.8491

38230

MYSc
0.843

263482

rad2
0.8339

2031

hypothetical protein
0.832

2587

O-FucT_like
0.8314

11907

hypothetical protein
0.831

10331

hypothetical protein
0.8293

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids... cl17459 60.3555 5.28E-11 1348 - 1399 specific 237991
CHROMO superfamily Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids... - 60.3555 5.28E-11 1348 - 1399 superfamily 266700
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 77.2727 1.83E-16 45 - 123 superfamily 260222
PHD PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... cl17445 65.594 8.11E-13 828 - 872 specific 250011
PHD superfamily PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... - 65.594 8.11E-13 828 - 872 superfamily 266687

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0006464 -

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

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