38230 MYSc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38230 chr_19a_19 MYSc 377064 382169 - MYSc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0045
 0.44

Most Highly Correlated Transcripts

5321

CobN-Mg_chel superfamily
0.9326

8244

Lipase superfamily
0.9189

262607

WD40 superfamily
0.9177

2065

hypothetical protein
0.9149

12602

MYSc
0.9124

263191

PLN03076
0.9116

262751

ERO1
0.9113

4842

Cas1_AcylT superfamily
0.9092

2587

O-FucT_like
0.9084

5961

Nucleotid_trans superfamily
0.9083

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger... cl00286 715.967 0 131 - 830 specific 238071
Motor_domain superfamily Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the... - 715.967 0 131 - 830 superfamily 260327

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 292062 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003774 GO:0005524 GO:0016459 GO:0004351 -

GO:0003774

motor activity

Details: 
Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016459

myosin complex

Details: 
A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes.
GO Category: 
CC

GO:0004351

glutamate decarboxylase activity

Details: 
Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.
GO Category: 
MF

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