20653 PseudoU_synth superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20653	chr_1	PseudoU_synth superfamily	594942	599002	+	PseudoU_synth superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449112	Thaps20653.2, Thaps20653.1, Thaps20653.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0244

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0091	0.31	0.00000003 0.31

Most Highly Correlated Transcripts

36917 TGT superfamily 0.8744	3292 COG2319 0.8508	42412 RNAP_I_II_AC40 0.8409	1357 FKBP_C 0.8369	4372 hypothetical protein 0.8346	5540 hypothetical protein 0.8342
3650 hypothetical protein 0.8337	31256 TGT superfamily 0.832	269034 hypothetical protein 0.8301	2157 D123 superfamily 0.8281

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	197.449	1.10E-55	570 - 941	superfamily	260207

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	256217	326921	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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